Dinman, Jonathan D.: search on Z-Library

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1

Altering SARS Coronavirus Frameshift Efficiency Affects Genomic and Subgenomic RNA Production

Plant, Ewan, Sims, Amy, Baric, Ralph, Dinman, Jonathan, Taylor, Deborah

Journal:

Year:

2013

Language:

english

File:

PDF, 826 KB

english, 2013

2

Translation Elongation and Recoding in Eukaryotes

Dever, Thomas E., Dinman, Jonathan D., Green, Rachel

Journal:

Cold Spring Harbor Perspectives in Biology

Year:

2018

Language:

english

File:

PDF, 831 KB

english, 2018

3

Structural and Functional Characterization of Programmed Ribosomal Frameshift Signals in West Nile Virus Strains Reveals High Structural Plasticity Among cis -Acting RNA Elements

Moomau, Christine, Musalgaonkar, Sharmishtha, Khan, Yousuf A., Jones, John Edward, Dinman, Jonathan D.

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 804 KB

english, 2016

4

Ablation of programmed -1 ribosomal frameshifting in Venezuelan equine encephalitis virus results in attenuated neuropathogenicity

Kendra, Joseph A., de la Fuente, Cynthia, Brahms, Ashwini, Woodson, Caitlin, Bell, Todd M., Chen, Bin, Khan, Yousuf A., Jacobs, Jonathan L., Kehn-Hall, Kylene, Dinman, Jonathan D.

Journal:

Journal of Virology

Year:

2016

Language:

english

File:

PDF, 950 KB

english, 2016

5

Functional and structural characterization of the Chikungunya virus translational recoding signals

Kendra, Joseph A., Advani, Vivek M., Chen, Bin, Briggs, Joseph W., Zhu, Jinyi, Bress, Hannah J., Pathy, Sushrut M., Dinman, Jonathan D.

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 446 KB

english, 2018

6

Molecular biology: Entry signals control development

Dinman, Jonathan D.

Journal:

Year:

2014

Language:

english

File:

PDF, 764 KB

english, 2014

7

A Three-Stemmed mRNA Pseudoknot in the SARS Coronavirus Frameshift Signal

Plant, Ewan P., Pérez-Alvarado, Gabriela C., Jacobs, Jonathan L., Mukhopadhyay, Bani, Hennig, Mirko, Dinman, Jonathan D.

Journal:

Year:

2005

Language:

english

File:

PDF, 522 KB

english, 2005

8

XIV. Yeast sequencing reports. Sequence of MKT1, needed for propagation of M2 satellite dsRNA of the L-A virus of Saccharomyces cerevisiae

Michael Vermut, William R. Widner, Jonathan D. Dinman, Reed B. Wickner

Journal:

Year:

1994

Language:

english

File:

PDF, 229 KB

english, 1994

9

Structural and functional analysis of 5S rRNA inSaccharomyces cerevisiae

Sergey Kiparisov, Alexey Petrov, Arturas Meskauskas, Petr V. Sergiev, Olga A. Dontsova, Jonathan D. Dinman

Journal:

Molecular Genetics and Genomics

Year:

2005

Language:

english

File:

PDF, 1.12 MB

english, 2005

10

Ribosomal Protein L3: Influence on Ribosome Structure and Function

Petrov, Alexey, Meskauskas, Arturas, Dinman, Jonathan D.

Journal:

Year:

2004

Language:

english

File:

PDF, 1015 KB

english, 2004

11

New Targets for Antivirals: The Ribosomal A-Site and the Factors That Interact with It

Terri Goss Kinzy, Jason W. Harger, Anne Carr-Schmid, Jane Kwon, Mythili Shastry, Michael Justice, Jonathan D. Dinman

Journal:

Year:

2002

Language:

english

File:

PDF, 404 KB

english, 2002

12

Ty1 Retrotransposition and Programmed +1 Ribosomal Frameshifting Require the Integrity of the Protein Synthetic Translocation Step

Jason W. Harger, Arturas Meskauskas, Jennifer Nielsen, Michael C. Justice, Jonathan D. Dinman

Journal:

Year:

2001

Language:

english

File:

PDF, 292 KB

english, 2001

13

Evolution of a helper virus-derived, ribosome binding translational enhancer in an untranslated satellite RNA of Turnip crinkle virus

Rong Guo, Arturas Meskauskas, Jonathan D. Dinman, Anne E. Simon

Journal:

Year:

2011

Language:

english

File:

PDF, 998 KB

english, 2011

14

Venezuelan Equine Encephalitis Virus Induces Apoptosis through the Unfolded Protein Response Activation of EGR1

Baer, Alan, Lundberg, Lindsay, Swales, Danielle, Waybright, Nicole, Pinkham, Chelsea, Dinman, Jonathan D., Jacobs, Jonathan L., Kehn-Hall, Kylene

Journal:

Journal of Virology

Year:

2016

Language:

english

File:

PDF, 1.49 MB

english, 2016

15

Major sperm protein genes from Onchocerca volvulus

Alan L. Scott, Jonathan Dinman, Daniel J. Sussman, Pornwadee Yenbutr, Samuel Ward

Journal:

Molecular and Biochemical Parasitology

Year:

1989

Language:

english

File:

PDF, 527 KB

english, 1989

16

A new system for naming ribosomal proteins

Ban, Nenad, Beckmann, Roland, Cate, Jamie HD, Dinman, Jonathan D, Dragon, François, Ellis, Steven R, Lafontaine, Denis LJ, Lindahl, Lasse, Liljas, Anders, Lipton, Jeffrey M, McAlear, Michael A, Moore,

Journal:

Current Opinion in Structural Biology

Year:

2014

Language:

english

File:

PDF, 200 KB

english, 2014

17

Cryo-Electron Microscopy (Cryo-EM) Structure of a Cap-Independent Translational Enhancer of the Turnip Crinkle Virus (TCV) Bound to the Eukaryotic Ribosome

Sharma, Gyanesh, Stupina, Vera, Pallesen, Jesper, Shapiro, Bruce, Simon, Anne, Dinman, Jonathan, Frank, Joachim

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 75 KB

english, 2012

18

An ‘integrated model’ of programmed ribosomal frameshifting

Jason W Harger, Arturas Meskauskas, Jonathan D Dinman

Journal:

Trends in Biochemical Sciences

Year:

2002

Language:

english

File:

PDF, 965 KB

english, 2002

19

Biophysical approaches to translational control of gene expression || The “Fifth” RNA Nucleotide: A Role for Ribosomal RNA Pseudouridylation in Control of Gene Expression at the Translational Level

Dinman, Jonathan D.

Year:

2013

Language:

english

File:

PDF, 792 KB

english, 2013

20

Crystal structure of the 80S yeast ribosome

Lasse Jenner, Sergey Melnikov, Nicolas Garreau de Loubresse, Adam Ben-Shem, Madina Iskakova, Alexandre Urzhumtsev, Arturas Meskauskas, Jonathan Dinman, Gulnara Yusupova, Marat Yusupov

Journal:

Current Opinion in Structural Biology

Year:

2012

Language:

english

File:

PDF, 2.90 MB

english, 2012

21

Evaluation of Microwave-Accelerated Residue-Specific Acid Cleavage for Proteomic Applications

Swatkoski, Stephen, Gutierrez, Peter, Wynne, Colin, Petrov, Alexey, Dinman, Jonathan D., Edwards, Nathan, Fenselau, Catherine

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 1.80 MB

english, 2008

22

Spermidine Deficiency Increases +1 Ribosomal Frameshifting Efficiency and Inhibits Ty1 Retrotransposition in Saccharomyces cerevisiae

David Balasundaram, Jonathan D. Dinman, Reed B. Wickner, Celia W. Tabor and Herbert Tabor

Journal:

Proceedings of the National Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 910 KB

english, 1994

23

Subtractional Heterogeneity: A Crucial Step toward Defining Specialized Ribosomes

Briggs, Joseph W., Dinman, Jonathan D.

Journal:

Year:

2017

Language:

english

File:

PDF, 295 KB

english, 2017

24

How Ribosomes Translate Cancer

Sulima, Sergey O., Hofman, Isabel J.F., De Keersmaecker, Kim, Dinman, Jonathan D.

Journal:

Cancer Discovery

Year:

2017

Language:

english

File:

PDF, 3.34 MB

english, 2017

25

Activation of the unfolded protein response in sarcoma cells treated with rapamycin or temsirolimus

Briggs, Joseph W., Ren, Ling, Chakrabarti, Kristi R., Tsai, Yien Che, Weissman, Allan M., Hansen, Ryan J., Gustafson, Daniel L., Khan, Yousuf A., Dinman, Jonathan D., Khanna, Chand, Jin, Dong-Yan

Journal:

Year:

2017

Language:

english

File:

PDF, 5.80 MB

english, 2017

26

Mutations in the MOF2/SUI1 gene affect both translation and nonsense-mediated mRNA decay

CUI, YING, GONZÁLEZ, CARLOS I., KINZY, TERRI GOSS, DINMAN, JONATHAN D., PELTZ, STUART W.

Journal:

Year:

1999

File:

PDF, 872 KB

1999

27

Pathways to Specialized Ribosomes: The Brussels Lecture

Dinman, Jonathan D.

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 600 KB

english, 2016

28

EGR1 upregulation following Venezuelan equine encephalitis virus infection is regulated by ERK and PERK pathways contributing to cell death

Dahal, Bibha, Lin, Shih-Chao, Carey, Brian D., Jacobs, Jonathan L., Dinman, Jonathan D., van Hoek, Monique L., Adams, Andre A., Kehn-Hall, Kylene

Journal:

Year:

2019

File:

PDF, 682 KB

2019

29

Two Ribosomes Are Better Than One... Sometimes

Olson, Alexandra N., Dinman, Jonathan D.

Journal:

Year:

2020

File:

PDF, 62 KB

2020

30

Biophysical approaches to translational control of gene expression || Molecular Dynamics Simulations of the Ribosome

Dinman, Jonathan D.

Year:

2013

Language:

english

File:

PDF, 1.16 MB

english, 2013

31

Ribosomal lesions promote oncogenic mutagenesis.

Sulima, Sergey O., Kampen, Kim R, Vereecke, Stijn, Pepe, Daniele, Fancello, Laura, Verbeeck, Jelle, Dinman, Jonathan D., De Keersmaecker, Kim

Journal:

Cancer Research

Year:

2018

Language:

english

File:

PDF, 7.04 MB

english, 2018

32

Single-Molecule Optical Trap Study of Human CCR5 mRNA Structure

de Messieres, Michel, Chang, Jen-Chien, Belew, Ashton T., Meskauskas, Arturas, Dinman, Jonathan D., La Porta, Arthur

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 36 KB

english, 2012

33

Peptidyl-Transferase Inhibitors have Antiviral Properties by Altering Programmed - 1 Ribosomal Frameshifting Efficiencies: Development of Model Systems

Jonathan D. Dinman, Maria J. Ruiz-Echevarria, Kevin Czaplinski and Stuart W. Peltz

Journal:

Proceedings of the National Academy of Sciences

Year:

1997

Language:

english

File:

PDF, 1.35 MB

english, 1997

34

A C-Terminal Deletion Mutant of Pokeweed Antiviral Protein Inhibits Programmed +1 Ribosomal Frameshifting and Ty1 Retrotransposition without Depurinating the Sarcin/Ricin Loop of rRNA

Katalin A. Hudak, Amy B. Hammell, Jason Yasenchak, Nilgun E. Tumer, Jonathan D. Dinman

Journal:

Year:

2001

Language:

english

File:

PDF, 268 KB

english, 2001

35

Expanding the Ribosomal Universe

Jonathan D. Dinman, Terri Goss Kinzy

Journal:

Year:

2009

Language:

english

File:

PDF, 262 KB

english, 2009

36

Efficient expression of the 15-kDa form of infectious pancreatic necrosis virus VP5 by suppression of a UGA codon

Haichen Song, Jennifer L. Baxter-Roshek, Jonathan D. Dinman, Vikram N. Vakharia

Journal:

Year:

2006

Language:

english

File:

PDF, 572 KB

english, 2006

37

Programmed Ribosomal Frameshifting Generates a Copper Transporter and a Copper Chaperone from the Same Gene

Meydan, Sezen, Klepacki, Dorota, Karthikeyan, Subbulakshmi, Margus, Tõnu, Thomas, Paul, Jones, John E., Khan, Yousuf, Briggs, Joseph, Dinman, Jonathan D., Vázquez-Laslop, Nora, Mankin, Alexander S.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.83 MB

english, 2017

38

Ribosomal protein L5 helps anchor peptidyl-tRNA to the P-site in Saccharomyces cerevisiae

MESKAUSKAS, ARTURAS, DINMAN, JONATHAN D.

Journal:

Year:

2001

Language:

english

File:

PDF, 1.39 MB

english, 2001

39

Biophysical approaches to translational control of gene expression Volume 8 || Rapid Kinetic Analysis of Protein Synthesis

Dinman, Jonathan D.

Year:

2013

Language:

english

File:

PDF, 647 KB

english, 2013

40

Enhanced purity, activity and structural integrity of yeast ribosomes purified using a general chromatographic method

Leshin, Jonathan A., Rakauskaitė, Rasa, Dinman, Jonathan, Meskauskas, Arturas

Journal:

Year:

2010

Language:

english

File:

PDF, 3.38 MB

english, 2010

41

The functional role of eL19 and eB12 intersubunit bridge in the eukaryotic ribosome

Kisly, Ivan, Gulay, Suna P., Mäeorg, Uno, Dinman, Jonathan D., Remme, Jaanus, Tamm, Tiina

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 1.59 MB

english, 2016

42

Structural and functional conservation of the programmed â1 ribosomal frameshift signal of SARS coronavirus 2 (SARS-CoV-2)

Kelly, Jamie A., Olson, Alexandra N., Neupane, Krishna, Munshi, Sneha, San Emeterio, Josue, Pollack, Lois, Woodside, Michael T., Dinman, Jonathan D.

Journal:

Journal of Biological Chemistry

Year:

2020

File:

PDF, 669 KB

2020

43

Chromatographic Purification of Highly Active Yeast Ribosomes

Meskauskas, Arturas, Leshin, Jonathan A., Dinman, Jonathan D.

Journal:

Journal of Visualized Experiments

Year:

2011

Language:

english

File:

PDF, 147 KB

english, 2011

44

A Ribosomal Frameshifting Structure in the CCR5 mRNA Leads to Mirna-Stimulated Nonsense-Mediated mRNA Decay

Kasprzak, Wojciech K., Dinman, Jonathan D., Shapiro, Bruce A.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

45

Single-Molecule Measurements of the CCR5 mRNA Unfolding Pathways

de Messieres, Michel, Chang, Jen-Chien, Belew, Ashton Trey, Meskauskas, Arturas, Dinman, Jonathan D., La Porta, Arthur

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 2.19 MB

english, 2014

46

Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway

Belew, Ashton Trey, Meskauskas, Arturas, Musalgaonkar, Sharmishtha, Advani, Vivek M., Sulima, Sergey O., Kasprzak, Wojciech K., Shapiro, Bruce A., Dinman, Jonathan D.

Journal:

Year:

2014

Language:

english

File:

PDF, 3.68 MB

english, 2014

47

The case for the involvement of the Upf3p in programmed −1 ribosomal frameshifting

DINMAN, JONATHAN, RUIZ-ECHEVARRIA, MARIA, WANG, WEIRONG, PELTZ, STUART

Journal:

Year:

2000

File:

PDF, 35 KB

2000

48

Onchocerca volvulus: Molecular cloning, primary structure, and expression of a microfilarial surface-associated antigen

Jonathan D. Dinman, Alan L. Scott

Journal:

Experimental Parasitology

Year:

1990

Language:

english

File:

PDF, 2.05 MB

english, 1990

49

Biophysical approaches to translational control of gene expression || A Multidisciplinary Approach to RNA Localisation

Dinman, Jonathan D.

Year:

2013

Language:

english

File:

PDF, 706 KB

english, 2013

50

Trajectories of the ribosome as a Brownian nanomachine

Dashti, Ali, Schwander, Peter, Langlois, Robert, Fung, Russell, Li, Wen, Hosseinizadeh, Ahmad, Liao, Hstau Y., Pallesen, Jesper, Sharma, Gyanesh, Stupina, Vera A., Simon, Anne E., Dinman, Jonathan D.,

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.29 MB

english, 2014

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